Established in 1993 within a neoclassical building in Archanes' Tzami district, the collection presents artifacts unearthed locally, including from the significant Minoan palace site. It features ceramic and stone vases, tools, and figurines illustrating Minoan daily life, customs, and art. A notable exhibit reconstructs a Minoan cemetery with replicas of ossuaries and burial goods. Copies of major finds like frescoes and jewelry, secured in the Heraklion Archaeological Museum, are also displayed. It offers context for the Archanes area's rich history.

Located in Heraklion, Crete, this museum, established in 1883, is one of Greece's most significant. It primarily houses an extensive collection of Minoan artifacts, including frescoes, pottery, and jewelry, showcasing Bronze Age achievements. Artifacts from Roman, Byzantine, and Venetian periods are also displayed, covering over 5,500 years of Cretan history. Housed in a notable neoclassical building designed by Patroklos Karantinos, it offers educational programs and temporary exhibitions, serving as a vital center for Minoan studies and Cretan cultural preservation.

Operating under the University of Crete in Heraklion, the Natural History Museum of Crete (NHMC) is dedicated to studying, protecting, and promoting the natural heritage of the Eastern Mediterranean. It is located within a restored industrial building, formerly an electricity power plant. Exhibits span four levels, featuring dioramas of regional habitats, interactive geological displays, and paleontological collections including fossils. The museum serves as a center for research and education, contributing to the conservation of regional biodiversity and offering programs for all ages focused on environmental awareness.

The Archaeological Museum of Agios Nikolaos, Crete, houses a remarkable collection of artifacts spanning from the Neolithic period to the end of the Greco-Roman era. Established in 1970, the museum showcases the evolution of art and culture in Eastern Crete. The collection includes finds from the Early Minoan cemetery of Agia Fotia and the Minoan palace of Malia. One of the most renowned objects is the "Goddess of Myrtos," a unique libation vessel from the Pre-palatial period. The museum's rectangular building features eight exhibition halls arranged around a central atrium, facilitating a clear and intuitive flow for visitors. The museum actively engages with the public through temporary exhibitions and educational programs. It is open from 08:30 to 15:30, closed on Tuesdays. Ticket prices vary depending on the season, with combined tickets available for multiple archaeological sites and museums in the region.